fix: restore missing files (package.json etc) and fix sync script logic

commands/instinct-status.md

@@ -0,0 +1,86 @@
+---
+name: instinct-status
+description: Show all learned instincts with their confidence levels
+command: true
+---
+
+# Instinct Status Command
+
+Shows all learned instincts with their confidence scores, grouped by domain.
+
+## Implementation
+
+Run the instinct CLI using the plugin root path:
+
+```bash
+python3 "${CLAUDE_PLUGIN_ROOT}/skills/continuous-learning-v2/scripts/instinct-cli.py" status
+```
+
+Or if `CLAUDE_PLUGIN_ROOT` is not set (manual installation), use:
+
+```bash
+python3 ~/.claude/skills/continuous-learning-v2/scripts/instinct-cli.py status
+```
+
+## Usage
+
+```
+/instinct-status
+/instinct-status --domain code-style
+/instinct-status --low-confidence
+```
+
+## What to Do
+
+1. Read all instinct files from `~/.claude/homunculus/instincts/personal/`
+2. Read inherited instincts from `~/.claude/homunculus/instincts/inherited/`
+3. Display them grouped by domain with confidence bars
+
+## Output Format
+
+```
+📊 Instinct Status
+==================
+
+## Code Style (4 instincts)
+
+### prefer-functional-style
+Trigger: when writing new functions
+Action: Use functional patterns over classes
+Confidence: ████████░░ 80%
+Source: session-observation | Last updated: 2025-01-22
+
+### use-path-aliases
+Trigger: when importing modules
+Action: Use @/ path aliases instead of relative imports
+Confidence: ██████░░░░ 60%
+Source: repo-analysis (github.com/acme/webapp)
+
+## Testing (2 instincts)
+
+### test-first-workflow
+Trigger: when adding new functionality
+Action: Write test first, then implementation
+Confidence: █████████░ 90%
+Source: session-observation
+
+## Workflow (3 instincts)
+
+### grep-before-edit
+Trigger: when modifying code
+Action: Search with Grep, confirm with Read, then Edit
+Confidence: ███████░░░ 70%
+Source: session-observation
+
+---
+Total: 9 instincts (4 personal, 5 inherited)
+Observer: Running (last analysis: 5 min ago)
+```
+
+## Flags
+
+- `--domain <name>`: Filter by domain (code-style, testing, git, etc.)
+- `--low-confidence`: Show only instincts with confidence < 0.5
+- `--high-confidence`: Show only instincts with confidence >= 0.7
+- `--source <type>`: Filter by source (session-observation, repo-analysis, inherited)
+- `--json`: Output as JSON for programmatic use